Journal Publications (205)
KS Kim, TJ O’Leary and N Winograd, “X-Ray Photoelectron Spectra of Lead Oxides,” Analytical Chemistry 45: 2214-2218, 1973.
JI Brauman, TJ O’Leary and AL Schawlow, “Isotope Separation by Selective Unimolecular Photoisomerization,” Optics Communications 12: 223-224, 1974.
TJ O’Leary, “Wideband Chelate Lasers in the Visible,” Optics Communications 14: 392-394,
F Eckhauser, H Appelman, T O’Leary, T Polley, D Bloch and J Turcotte, “Hepatic Pathology as a Determinant of Prognosis after Portal Decompression,” American Journal of Surgery 139: 105-112, 1980.
TJ O’Leary, “Photolysis of Hydrogen Bromide-Deuterium Bromide Mixtures at 2537 A,” Journal of Physical Chemistry 84: 2016‑2019, 1980.
D Campbell, F Eckhauser, R Oehler, T O’Leary and W Hart, “Liposarcoma of the Lower Extremity,” Surgery 88: 453-460, 1980.
TJ O’Leary, DP O’Leary, CH Herman and M Habbersett, “Classification of Gynecologic Flow Cytometry Data: A Comparison of Methods,” Analytical and Quantitative Cytology 3: 135-142, 1980.
TJ O’Leary, “Interactions of Small Nonpolar Molecules with Biological Membranes: an Exactly Solvable Model,” Biophysical Chemistry 13: 315-323, 1981.
TJ O’Leary and PH Abbrecht, “Predicting Oral Anticoagulant Response Using a Pharmacodynamic Model,” Annals of Biomedical Engineering 9: 199-216, 1981.
TJ O’Leary and D Bloch, “Independent Value of Laboratory Tests in Latent Hemochromatosis,” University of Michigan Medical Center Journal 47: 10-12, 1981.
TJ O’Leary, L Liotta and J Gill, “Pigmented Adrenal Nodules in Cushing Syndrome,” Archives of Pathology and Laboratory Medicine 106: 257, 1982.
TJ O’Leary, “Effects of Small Nonpolar Molecules on Membrane Compressibility and Permeability: A Theoretical Study of the Effects of Anesthetic Gases,” Biophysical Chemistry 15: 299-310, 1982.
M Vermess, JL Doppman, PH Sugarbaker, RI Fisher, TJ O’Leary, DC Chatterji, G Grimes, RHAdamson, M Willis and BK Edwards, “Computed Tomography of the Liver and Spleen withIntravenous Lipoid Contrast Material: Review of 60 Examinations,” American Journal of Roentgenology 138: 1063-1071, 1982.
PH Abbrecht, TJ O’Leary and DM Behrendt, “Evaluation of a Computer‑Assisted Method forIndividualized Anticoagulation: Retrospective and Prospective Studies with a Pharmacodynamic Model,” Clinical Pharmacology and Therapeutics 32: 129-136, 1982.
TJ O’Leary, “A Simple Theoretical Model for the Effects of Cholesterol and Polypeptides on Biological Membranes,” Biochimica et Biophysica Acta 731: 47-53, 1983
Reichert, TJ O’Leary, DL Levens, CR Simrell and AM Macher, “Autopsy Pathology in the Acquired Immune Deficiency Syndrome,” American Journal of Pathology 112: 357-382, 1983.
TH Shawker, N Javadpour, T O’Leary, E Shapiro and AG Krudy, “Ultrasound Detection of ‘Burned Out’ Primary Testicular Tumors in Clinically Normal Testes,” Journal of Ultrasound in Medicine 2: 477-479, 1983.
DH Miller, TJ O’Leary, JJ Vucich, M Girton, M Vermess and JL Doppmann, “Experimental Evaluation of Five Liver-Spleen Specific Contrast Agents,” Journal of Computer Assisted Tomography 7: 1022-1028, 1983.
TJ O’Leary, “A Model for the Interaction of Anesthetics with the Phospholipid Membrane Headgroup‑Interface Region,” Biochimica et Biophysica Acta 769: 197-200, 1984.
TJ O’Leary and IW Levin, “Raman Spectroscopic Study of the Melting Behavior of Anhydrous Dipalmitoyl Phosphatidylcholine Bilayers,” Journal of Physical Chemistry 88: 1790-1796, 1984.
DL Miller, M Vermess, JL Doppman, P Sugarbaker, R Simon, TJ O’Leary, G Grimes, DG Chatterji and M Willis, “CT of the Liver and Spleen with EOE‑13: Review of 225 Examinations,” American Journal of Roentgenology 143: 235-243, 1984.
TJ O’Leary and IW Levin, “Effects of Solvent on Biomembrane Structure: Raman Spectroscopic Investigation of Dipalmitoyl‑ phosphatidylcholine Dispersed in N‑ethylammonium Nitrate,” Journal of Physical Chemistry 88: 4074-4078, 1984.
TJ O’Leary, PD Ross and IW Levin, “Effects of Anesthetic and Non‑Anesthetic Steroids on Dipalmitoylphosphatidylcholine Liposomes: A Calorimetric and Raman Spectroscopic Investigation,” Biochemistry 23: 4636-4641, 1984.
TJ O’Leary and IW Levin, “Raman Spectroscopic Study of an Interdigitated Lipid Bilayer: Dipalmitoylphosphatidylcholine Dispersed in Glycerol,” Biochimica et Biophysica Acta 776: 185-189, 1984.
TJ O’Leary and IW Levin, “Secondary Structure of Endocrine Amyloid: Infrared Spectroscopy of Medullary Carcinoma of the Thyroid,” Laboratory Investigation 53: 240-242, 1985.
JR Silvius, M Lyons, PL Yeagle and TJ O’Leary, “Thermotropic Properties of Bilayers Containing Branched‑ Chain Phospholipids. Calorimetric, Raman and 31P-NMR Studies,” Biochemistry 24: 5388-5395, 1985.
AM Macher, DH Connor and TJ O’Leary, “AIDS Case for Diagnosis,” Military Medicine 151: M1-M8, 1986.
DL Miller, JD Bacher, TJ O’Leary and M Maxwell, “Comparison of Hot Contrast Material and Hot Saline for Renal Ablation in a Canine Model,” Investigative Radiology 21: 56-63, 1986.
TJ O’Leary and IW Levin, “Raman Spectroscopy of Selectively Deuterated Dimyristoyl-phosphatidylcholine: Studies on DMPC‑Cholesterol Bilayers,” Biochimica et Biophysica Acta 854: 321‑324, 1986.
TJ O’Leary, PD Ross, MR Lieber and IW Levin, “Effects of Cyclosporine A on Biomembranes: Vibrational Spectroscopic, Calorimetric and Functional Studies,” Biophysical Journal 49: 795-801, 1986.
JR Silvius, PM Brown and TJ O’Leary, “Role of Headgroup Structure of Amino Phospholipids: Hydrated and Dehydrated Lamellar Phases of Saturated Phosphatidylethanolamine Analogues,” Biochemistry 25: 4249-4258, 1986.
TJ O’Leary, PD Ross and IW Levin, “Effects of Anesthetic Tetradecenols on Phosphatidylcholine Bilayers: Implications for the Mechanism of the Pretransition,” Biophysical Journal 50: 1053-1059, 1986.
TJ O’Leary, “Lipid Diffusion in Complex Biological Membranes,” Proceedings of the National Academy of Sciences USA 84: 429-433, 1987.
DL Miller, TJ O’Leary and M Girton, “Distribution of Iodized Oil Within the Liver after Hepatic Arterial Injection,” Radiology 162: 849-852, 1987.
JM Ward, TJ O’Leary, GB Baskin, R Beneveniste, PL Nara and RH Rhodes, “Immunohistochemical Localization of Human and Simian Immunodeficiency Viral Antigens in Fixed Tissue Sections,” American Journal of Pathology 127: 199-205, 1987.
TJ O’Leary, “Diffusion in Concentrated Protein Solutions,” Biophysical Journal 52: 137-139, 1987.
PM Green, JT Mason, TJ O’Leary and IW Levin, “Effects of Hydration, Cholesterol, Amphotericin B and Cyclosporine A on the Lipid Bilayer Interface Region: An Infrared Spectroscopic Study using 2‑[1,13C]-Dipalmitoylphosphatidylcholine,” Journal of Physical Chemistry 91: 5099-5103, 1987.
DL Miller, JL Doppman, R Chang, JT Simmons, TJ O’Leary, JA Norton, AM Spiegel, SJ Marxand and GD Aurbach, “Angiographic Ablation of Parathyroid Adenomas: Lessons from Ten Years Experience,” Radiology 165: 601-607, 1987.
B Pastakia, TH Shawker, M Thaler, T O’Leary and PA Pizzo, “Hepatosplenic Candidiasis: Wheels Within Wheels,” Radiology 166: 417-421, 1988.
M Thaler, B Pistakia, TH Schawker, TJ O’Leary and PA Pizzo, “Hepatic Candidiasis in Immunocompromised Patients: a New or Evolving Syndrome,” Annals of Internal Medicine 108: 88-100, 1988.
DW Anderson, R Virmani, JM Reilly, T O’Leary, RE Cunnion, M Robinowitz, AM Macher, U Punja, SP Villaflor, JE Parillo and WC Roberts, “Prevalent Myocarditis at Necropsy in the Acquired Immunodeficiency Syndrome,” Journal of the American College of Cardiology 11: 792-799, 1988.
M Thaler, J Bacher, TJ O’Leary, and PA Pizzo, “Evaluation of Single‑Drug and Combination Antifungal Therapy in an Experimental Model of Candidiasis on Rabbits with Prolonged Neutropenia,” Journal of Infectious Diseases 158: 81-88, 1988.
JM Reilly, RE Cunnion, DW Anderson, TJ O’Leary, JT Simmons, HC Lane, AS Fauci, WC Roberts, R Virmani and JE Parillo, “Frequency of Myocarditis, Left Ventricular Dysfunction and Ventricular Tachycardia in the Acquired Immune Deficiency Syndrome,” American Journal of Cardiology 62: 789-793, 1988.
TJ O’Leary, WF Engler and KM Ventre, “Infrared Microspectroscopy of Human Tissue,” Applied Spectroscopy 43: 1095-1097, 1989.
TJ O’Leary, “Nucleic Acid Probes, A Primer for Pathologists,” (book review), Archives of Pathology and Laboratory Medicine 114: 1085, 1990.
FA Tavassoli, MW Jones, RM Majeste, GL Bratthauer and TJ O’Leary, “Immunohistochemical Staining with Monoclonal Antibody B72.3 in Benign and Malignant Breast Disease,” American Journal of Surgical Pathology 14: 128-133, 1990.
R Marsella, S Buckner, G Bratthauer and TJ O’Leary, “Identification of Adenocarcinoma in Effusions: a comparison of immunoperoxidase staining for TAG-72 vs. CEA,” Acta Cytologica 34: 578-580, 1990.
JA Centeno and TJ O’Leary, “Interactions of Short‑chain Alcohols with Dimyristoylphosphatidylethanolamine Bilayers: a Calorimetric and Infrared SpectroscopicInvestigation” Biochemistry 29: 7289-7296, 1990.
JT Mason and TJ O’Leary, “Effects of Headgroup Methylation and Acyl Chain Length on the Volume of Melting of Phosphatidylethanolamines,” Biophysical Journal 58: 277-281, 1990.
JT Mason and TJ O’Leary, “Effects of Formaldehyde Fixation on Protein Secondary Structure: A Calorimetric and Infrared Spectroscopic Investigation,” Journal of Histochemistry and Cytochemistry 39: 225-229, 1991.
M Koss, L Hochholzer and TJ O’Leary, “Pulmonary Blastomas,” Cancer 67: 2368-2381, 1991.
K Min, S Holmquist, SC Peiper and TJ O’Leary, “Poorly Differentiated Adenocarcinoma with Lymphoid Stroma (Lymphoepithelioma- like carcinomas) of the Stomach. Report of three cases with Epstein-Barr virus genome demonstrated by polymerase chain reaction,” American Journal of Clinical Pathology 96: 219-227, 1991.
CF Wright, AH Reid, MM Tsai, KM Ventre, PJ Murari, G Frizzera and TJ O’Leary, “Detection of Epstein-Barr Virus Sequences in Hodgkin’s Disease by Polymerase Chain Reaction,” American Journal of Pathology 139: 393-398, 1991.
RL Becker, D Venzon, EE Lack, UV Mikel, SW Weiss and TJ O’Leary, “Cytometry and Morphometry of Malignant Fibrous Histiocytoma of the Extremities: Prediction of Metastasis and Mortality,” American Journal of Surgical Pathology 15: 957-964, 1991.
CA Moran, S Tuur, P Angritt, AH Reid and TJ O’Leary, “Epstein‑Barr Virus in Hodgkin’s Disease from Patients with Human Immunodeficiency Virus Infection,” Modern Pathology 5: 85-88, 1992.
JA Centeno, VF Kalasinsky, FB Johnson, TN Vinh and TJ O’Leary, “Fourier-transform Infrared Microscopic Identification of Foreign Materials in Tissue Sections,” Laboratory Investigation 66: 123-131, 1992.
GL Bratthauer, FA Tavassoli and TJ O’Leary, “Etiology of Breast Carcinoma: No Apparent Role for Papillomavirus Types 6/11/16/18,” Pathology Research and Practice 188: 384-386, 1992.
WD Travis, CH Fox, KO Devaney, LM Weiss, TJ O’Leary, FP Ognibene, A Suffredini, MJ Rosen, MB Cohen, H Masur and J Shelhamer, “Lymphoid Pneumonitis in 50 Adult HIV-Infected Patients: Lymphocytic Interstitial Pneumonitis vs. Nonspecific Interstitial Pneumonitis,” Human Pathology 23: 529-541, 1992.
TJ O’Leary, UV Mikel and RL Becker, “Computer-assisted Image Interpretation: Use of a Neural Network to Differentiate Tubular Carcinoma from Sclerosing Adenosis,” Modern Pathology 5: 402-405, 1992.
V Malamou-Mitsi, MM Tsai, AA Gal, MN Koss and TJ O’Leary, “Lymphoid Interstitial Pneumonia not Associated with HIV Infection: Role of Epstein‑Barr Virus,” Modern Pathology 5: 487-491, 1992.
RL Becker, UV Mikel and TJ O’Leary, “Morphometric Distinction of Sclerosing Adenosis from Tubular Carcinoma of the Breast,” Pathology Research and Practice 188: 847-851, 1992.
AH Reid, RE Cunningham, G Frizzera and TJ O’Leary, “Bcl-2 Rearrangement in Hodgkin’s Disease: Results of Polymerase Chain Reaction, Flow Cytometry and Sequencing on Formalin- Fixed, Paraffin-Embedded Tissue,” American Journal of Pathology 142: 395-402, 1993.
MM Tsai and TJ O’Leary, “Identification of Toxoplasma gondii in Formalin‑fixed, Paraffin- embedded Tissue by Polymerase Chain Reaction,” Modern Pathology 6: 185-188, 1993.
DM Frisman, P Schleiff, S Buckner, JD Nocito, WF McCarthy and TJ O’Leary, “Immunocytochemistry in the Differential Diagnosis of Effusions: Use of Logistic Regression to Select A Panel of Antibodies to Distinguish Adenocarcinomas from Mesothelial Proliferations,” Modern Pathology 6: 179-184, 1993.
TJ Reed, AH Reid, K Wallberg, TJ O’Leary and G Frizzera, “Determination of B‑cell clonality in paraffin-embedded lymph nodes using the polymerase chain reaction (PCR), Diagnostic Molecular Pathology 2: 42-49, 1993.
RE Cunningham, BH Federspiel, WF McCarthy, LH Sobin and TJ O’Leary, “Predicting Prognosis of Gastrointestinal Smooth Muscle Tumors: Role of Clinical and Histologic Evaluation, Flow Cytometry and Image Cytometry,” American Journal of Surgical Pathology 17: 588-594, 1993.
RL Becker, CS Specht, RV Jones, ME Rueda-Pedraza and TJ O’Leary, “Use of Remote Video Microscopy (Telepathology) as an Adjunct to Neurosurgical Frozen Section Consultation,” Human Pathology 24: 909-911, 1993.
TJ O’Leary and M Stetler‑Stevenson, “Diagnosis of t(14; 18) by PCR: The Natural Evolution of a Laboratory Test,” (Editorial) Archives of Pathology and Laboratory Medicine 118: 789‑790, 1994.
JA Centeno, KS Ishak, FG Mullick, WA Gahl and TJ O’Leary, “Infrared Microspectroscopy and Laser Raman Microprobe in the Diagnosis of Cystinosis,” Applied Spectroscopy 48: 569-572, 1994.
RJ Sbaschnig, RE Cunningham, LH Sobin and TJ O’Leary, “Proliferating Cell Nuclear Antigen Immunocytochemistry in the Evaluation of Gastrointestinal Smooth Muscle Tumors,” ModernPathology 7: 780-783, 1994.
TJ O’Leary, Cynthia Wright, M. Tsai and M Cushion, “Use of Semiquantitative Polymerase Chain Reaction to Assess Onset and Treatment of Pneumocystis Carinii Infection in the Rat Model,” Journal of Clinical Microbiology 33: 718-724, 1995.
JA Hyman, LK Johnson, MM Tsai and TJ O’Leary, “Specificity of Polymerase Chain Reaction Identification of Toxoplasma gondii Infection in Paraffin-embedded Animal Tissues,” Journal of Veterinary Diagnostic Investigation 7: 725-728, 1995.
JT Mason, RE Cunningham and TJ O’Leary, “Lamellar‑phase Polymorphism in Interdigitated Bilayer Assemblies,” Biochimica et Biophysica Acta 1236: 65-72, 1995.
RC Marsella, SB Buckner, GL Bratthauer, DM O’Connor, J Proctor and TJ O’Leary, “Identification of Genital Herpes Simplex Virus Infection by Immunoperoxidase Staining: Comparison With Culture Results and Cytology,” Applied Immunohistochemisty, 3: 184-189, 1995.
KL Liaw, AW Hsing, CJ Chen, MH Schiffman, TW Zhang, CY Hsieh, CE Greer, SL You, TW Huang, TC Wu, TJ O’Leary, J Seidman, CL Meinert and MM Manos, “Human Papillomavirus and cervical neoplasia: a case-control study in Taiwan,” International Journal of Cancer 62: 565-571, 1995.
TJ O’Leary and M.W. Steffes, “Can You Count on the Mitotic Index?,” Human Pathology 27: 147-151, 1996.
AH Reid, MM Tsai, DJ Venzon, CF Wright, EE Lack and TJ O’Leary, “MDM2 Amplification and p53 Mutation in Malignant Fibrous Histiocytoma,” Diagnostic Molecular Pathology, 5: 65-73, 1996.
AW Hsing, R Burk, KL Liaw, CJ Chen, M Schiffman, T Zhang, C Greer, SL You, CY Hsieh, T Huang, TC Wu, T O’Leary, J Seidman and M Manos, “Inter-Laboratory variation in PCR-based human papillomavirus DNA assay,” Cancer Epidemiology, Biomarkers and Prevention 5: 483-484, 1996.
TJ O’Leary and JT Mason, “A New Phase in Phosphatidylcholines,” Biophysical Journal, 71: 2915-2916, 1996.
MM Batenjany, TJ O’Leary, IW Levin and JT Mason, “Packing Characteristics of Two-Component Bilayers Composed of Ester- and Ether-Linked Phospholipids,” Biophysical Journal 72: 1695-1700, 1997.
KJ Smith, JS Graham, HG Skelton, T O’Leary, RB Moeller, CV Okerberg and CG Hurst, “Evaluation of Cross-Reacting Anti-human Antibodies in the Dysthymic Hairless Guinea Pig model (HGP) Suggests that the HGP May be a Model for the Study of Proliferative Skin Disease. Journal of Dermatological Science 14: 240-250, 1997.
TJ O’Leary, “Myeloid Metaplasia of the Breast” (Critical Commentary), Pathology Research and Practice, 193: 223-224, 1997.
TJ Emory, GW Derringer, LH Sobin and TJ O’Leary, “Ki-67 (MIB-1) Staining as a Prognostic Factor in Gastrointestinal Smooth Muscle Tumors,” Journal of Surgical Pathology 2: 239-242, 1997.
TJ O’Leary, “Flow Cytometry in Diagnostic Cytopathology,” Diagnostic Cytopathology 18: 41-46, 1998.
TJ O’Leary, M Tellado, S Buckner, IS Ali, A Stevens, CW Ollayos, “Papnet-Assisted Rescreening of Cervical Smears: Cost-Effectiveness in Comparison with a 100% Manual Rescreening Strategy, Journal of the American Medical Association 279: 235-237, 1998.
TJ O’Leary, SB Buckner and CW Ollayos, “Rescreening of Cervical Papanicolaou Smears using PAPNET,” (letter) Journal of the American Medical Association 279: 1787-1788, 1998.
JH Lichy, M Zavar, MM Tsai, TJ O’Leary and JK Taubenberger, “Loss of Heterozygosity on Chromosome 11p15 During histologic Progression in Microdissected Ductal Carcinoma of the Breast,” American Journal of Pathology 153: 271-278, 1998.
KJ Smith, JS Graham, HG Skelton, T Hamilton, T O’Leary, CV Okerberg, R Moeller, CG Hurst. “Sensitivity of Cross-Reacting Antihuman Antibodies in Formalin-Fixed Porcine Skin, Including Antibodies to Proliferation Antigens and Cytokeratins with Specificity in the Skin.” Journal of Dermatological Science 18: 19-29, 1998.
TS Emory and TJ O’Leary, “Prognosis and Surveillance of Gastrointestinal Stromal/Smooth Muscle Tumors,” Annals of Chiurgie and Gynaecologie 87; 306-310, 1998.
SI Ernst, AE Hubbs, RM Przygodzki, TS Emory, LH Sobin and TJ O’Leary, “KIT Mutation Portends Poor Prognosis in Gastrointestinal Stromal/Smooth Muscle Tumors,” Laboratory Investigation 78: 1633-1636, 1998.
TJ Emory, LH Sobin, L Lukes, DH Lee and TJ O’Leary, “Prognosis of Gastrointestinal Smooth Muscle/Stromal Tumors: Dependence on Anatomic Site.” American Journal of Surgical Pathology 23: 82- 87, 1999.
HG Skelton, TJ O’Leary, EJ Hilyard and KJ Smith. “Advanced Laboratory Techniques at the Armed Forces Institute of Pathology Applicable to Diagnosis and Research in Dermatology.” Dermatology Clinics 17: 125-34, 1999.
TJ O’Leary. “Reducing the Impact of Endogenous Ribonucleases on Reverse-Transciption- PCR Assay Systems.” (Editorial) Clinical Chemistry 45: 449-450, 1999.
TJ O’Leary, “Molecular Diagnosis of Hereditary Nonpolyposis Colorectal Cancer.” (Editorial), Journal of the American Medical Association, 282: 281-282, 1999.
JD Seidman, CS Wasserman, SC Aisner, PJ MacKoul and TJ O’Leary, “Cluster of Uterine Mullerian Adenosarcoma in the Washington, DC Metropolitan Area with High Incidence of Sarcomatous Overgrowth,” American Journal of Surgical Pathology 23:809-814, 1999.
TJ O’Leary, SIB Ernst, RM Przygodzki, TS Emory and LH Sobin, “Loss of Heterozygosity at 1p36 Predicts Poor Prognosis in Gastrointestinal Stromal/Smooth Muscle Tumors.” Laboratory Investigation 70:1461-147, 1999.
D Briscoe, CF Adair, LD Thompson, MV Tellado, SB Buckner, DL Rosenthal and TJ O’Leary, “Telecytologic Diagnosis of Breast Fine Needle Aspiration Biopsies: Intra-observer Concordance.” Acta Cytologica, 44: 175-180, 2000.
RA Frommelt, MR Peterson and TJ. O’Leary, “A Comparison of Cervical Pathology Between United States Air Force Women Who Did and Did Not Serve in the Persian Gulf War.” Annals of Epidemiology 10: 285-292, 2000.
JM Conroy, TG Kolda, DP O’Leary and TJ O’Leary, “Chromosome Identification Using Hidden Markov Models: Comparison with Neural Network, Singular Value Decomposition Principal Components Analysis, and Fisher Discriminant Analysis,” Laboratory Investigation 80: 1629-1641, 2000.
SQ Li, TJ O’Leary, LH Sobin, YS Erozan, DL Rosenthal and RM Przygodzki, “Analysis of KIT Mutation and Protein expression on fine needle aspirates of Gastrointestinal Stromal/Smooth Muscle Tumors,” Acta Cytologica, 44: 981-986, 2000.
SQ Li, TJ O’Leary, SB Buckner, RM Przygodzki, LH Sobin, YS Erozan and DL Rosenthal, “Fine Needle aspiration of Gastrointestinal Stromal Tumors: Report Of 19 Cases,” Acta Cytologica, 45: 9-17, 2001.
TJ O’Leary, “Standardization in Immunohistochemistry. Applied Immunohistochemistry and Molecular Morphology, 9:3-8, 2001.
RE Cunningham, SL Abbondanzo, WS Chu, TS Emory, LH Sobin and TJ O’Leary, “Apoptosis, bcl-2 Expression and p53 Expression in Gastrointestinal Stromal/Smooth Muscle Tumors,” Applied Immunohistochemistry and Molecular Morphology 9: 19-23, 2001.
Z-M Sheng, RM Przygodzki and TJ O’Leary, “Rapid Screening for KIT Mutation by Capillary Electrophoresis (letter),” Clinical Chemistry, 47: 1325-1326, 2001.
Berman J, O’Leary TJ. Gastrointestinal Stromal Tumor Workshop. Human Pathology 82: 578-582, 2001.
RM Przygodzki, MN Koss and TJO’Leary “Pleomorphic (Giant and/or Spindle Cell) Carcinoma of Lung Shows a High Percentage Of Variant Cyp1a1*2,” Molecular Diagnosis, 6: 109-115, 2001.
E Thunnissen, AW Amergen, M Koss, WD Travis, TJ O’Leary and I Ellis, “Mitotic Counting in Surgical Pathology – Sampling Bias, Heterogeneity and Statistical Uncertainty,” Histopathology 39: 1-8, 2001.
PM Alli, CW. Ollayos, LD. Thompson, I Kapadia, D Butler, BH Williams, DL Rosenthal and TJ O’Leary, “Telecytology: Intraobserver and Interobserver Reproducibility in the Diagnosis of Cervical-Vaginal Smears,” Human Pathology, 32: 1318-1322, 2001.
EA Allen, CW Ollayos, MV Tellado, D Butler, SB Buckner, BH Williams and TJ O’Leary, “Characteristics of a Telecytology Consultation Service,” Human Pathology, 32: 1323-1326, 2001.
BH Williams. D Butler, FG Mullick and TJ O’Leary, “Clinical Evaluation of an International Static Image-Based Telepathology Service,” Human Pathology, 32: 1309-1317, 2001.
RM Przygodzki, ZD Goodman, L Rabin, JA Centeno, Y Liu, AE Huffs and TJ O’Leary, “Hemochromatosis (HFE) Gene Sequence Analysis of Formalin-Fixed, Paraffin-Embedded Liver Biopsy Specimens.” Molecular Diagnosis 6:227-232, 2001.
JD Seidman, ME Sherman, KA Bell, H Katabuchi, TJ O’Leary and RJ Kurman, “Salpingitis, Salpingoliths and Serous Tumors of the Ovaries: Is There a Connection?,” International Journal of Gynecologic Pathology, 21: 101-107 2002.
CD Fletcher, JJ Berman, C Corless , F Gorstein, J Lasota, BJ Longley, M Miettinen, TJ O’leary, H Remotti, BP Rubin, B Shmookler, LH Sobin, SW Weiss. Diagnosis of Gastrointestinal Stromal tumors: A consensus approach. Human Pathology 33:459-465, 2002 and International Journal of Surgical Pathology 10: 81-89, 2002.
T O’Leary and JJ Berman, Gastrointestinal Stromal Tumors: Answers and Questions. Human Pathology 33: 456-458, 2002
TJ O’Leary, “Proficiency Testing in Cytopathology,” Accreditation and Quality Assurance 7:357-361, 2002.
RM Przygodzki, AE Hubbs, FQ Zhao and TJ O’Leary, ”Primary Mediastinal Seminomas: Evidence Of Single And Multiple KIT Mutations,” Laboratory Investigation 82: 1369-1375, 2002.
SQ Li, ZM Sheng, YJ Baili, YS Erozan and TJ O’Leary, “Detection of Human Telomerase Reverse Transcriptase mRNA in Colonic Brush Specimens as an Adjunct to Cytopathologic Diagnosis of Colonic Adenocarcinoma,” Acta Cytologica 46: 1069-1074, 2002.
FQ Zhao, ZM Sheng, MM Tsai, AE Hubbs, R Wang, TJ O’Leary, DJ Izon and JT Taubenberger, “Serial Analysis of Gene Expression in Murine Fetal Thymocyte Cell Lines,” International Immunology 14: 1383-1395, 2002.
BH Williams, IS Hong, FG Mullick, DR Butler, FR Herring and TJ O’Leary, “Image Quality in an International Static Image-based Telepathology Service,” Human Pathology 54: 1228-1234, 2003.
VK Rait, TJ O’Leary and JT Mason, “Modeling Formalin Fixation and Antigen Retrieval with Bovine Pancreatic Ribonuclease A I. Structural and Functional Alterations,” Laboratory Investigation, 84: 292-299, 2004.
VK Rait, L Xu, TJ O’Leary and JT Mason, “Modeling Formalin Fixation And Antigen Retrieval With Bovine Pancreatic RNAse A II. Interrelationship of Cross-Linking, Immunoreactivity, and Heat Treatment,” Laboratory Investigation, 84: 300-306, 2004.
TJ O’Leary and JT Mason, “A Molecular Mechanism of Formalin Fixation and Antigen Retrieval,” American Journal of Clinical Pathology 122: 154, 2004.
TJ O’Leary, “State of the Art Symposium: Prescreening and Rescreening, Cancer Cytopathology 102:331-333, 2004.
E Mansfield, SI Gutman and TJ O’Leary, “FDA Regulation of In-Vitro Diagnostic Devices,” Journal of Molecular Diagnostics 7:2-7, 2005.
JW Lee, RS Weiner, JM Sailstad, RR Bowsher, DW Knuth, P.J. O’Brien, JL Fourcrow, R Dixit, L Pandite, RG Pietrusko, HD Soares, V Quarmby, OL Vesterqvist, DM Potter, JL Witliff, HA Fritche, T O’Leary, L Perlee, S Kadam and JA Wagner. “Method Validation and Measurement of Biomarkers in Nonclinical and Clinical Samples in Drug Development: A Conference Report,” Pharmaceutical Research 22: 499-511, 2005.
VK Rait, Q Zhang, D Fabris, JT Mason, and TJ O’Leary, “Conversions of Formaldehyde-Modified 2´-Deoxyadenosine 5´-Monophosphate in Conditions Modeling Formalin-Fixed Tissue Dehydration,” Journal of Histochemistry and Cytochemistry, 54: 301-310, 2006.
B Pessanha, K Potter, F Kolodgie, A Farb, R Kutys, Erik Mont, A Burke, TJ O’Leary, and R Virmani, “Characterization of Intimal Changes in Coronary Artery Specimens Using Magnetic Resonance Microscopy,” Radiology, 241: 107-115, 2006.
JT Mason, L Xu, ZM Sheng, and TJ O’Leary, “Liposome-PCR Assay for the Ultrasensitive
Detection of Biological Toxins,” Nature Biotechnology, 24: 555-557, 2006.
JT Mason, L Xu, ZM Sheng, J He and TJ O’Leary, “Liposome Polymerase Chain Reaction for the Ultrasensitive Detection of Cholera Toxin and Botulinum Neurotoxin Type A,” Nature Protocols, 2: 2003-2010, 2006.
CB Fowler, RE Cunningham, TJ O’Leary and JT Mason, “Tissue Surrogates” as a Model for Archival Formalin-Fixed, Paraffin-Embedded Tissues, Laboratory Investigation, 87: 836-846, 2007.
RT Pu, ZM Sheng, CW Michael, M Rhode, DP Clark and TJ O’Leary, “Methylation Profiling of Mesothelioma Using Real-Time Methylation-Specific PCR,” Diagnostic Cytopathology, 35: 498-502, 2007.
DL Evers, CB Fowler, RE Cunningham, JT Mason, and TJ. O’Leary, A Novel HPLC Method reveals that Precipitation of 2′-deoxyadenosine 5′-monophosphate with Lithium Perchlorate/acetone Leads to Base Depurination,” Analytical Biochemistry 370: 255-257, 2007.
CB Fowler, RE Cunningham, TJ Waybright, J Blonder, TD Veenstra, TJ O’Leary and JT Mason, “Elevated Hydrostatic Pressure Promotes Protein Recovery from Formalin-Fixed,
Paraffin-Embedded Tissue Surrogates,” Laboratory Investigation 88: 185-195, 2008.
CB Fowler, TJ O’Leary and JT Mason, “Modeling Formalin Fixation and Histological Processing With Ribonuclease A: Effects of Ethanol Dehydration on Reversal of Formaldehyde Cross-Links,” Laboratory Investigation 88: 785-791, 2008
TJ O’Leary, CB. Fowler, DL Evers and JT Mason. “Protein Fixation and Antigen Retrieval: Chemical Studies,” Biotechnic and Histochemistry 84: 217-21, 2009.
TJ O’Leary. Past and Present as Prologue , “Journal of Molecular Diagnostics 12: 1-2, 2010.
J Concato, P Peduzzi, GD Huang, TJ O’Leary and J Kupersmith, “Comparative Effectiveness Research: What Kind Of Studies Do We Need?” Journal of Investigative Medicine, 58, 764-769, 2010.
M Bernard, JR Slutsky and TJ O’Leary, “Comparative Effectiveness Research Priorities at Federal Agencies: The View from the Department of Veterans Affairs, National Institute on Aging, and Agency for Healthcare Research and Quality.” Journal of the American Geriatric Society, 58:1187-1192, 2010.
SN Khleif, JH Doroshow, WN Hait and the AACR-FDA-NCI Cancer Biomarkers Collaborative. “AACR-FDA-NCI Cancer Biomarkers Collaborative consensus report: advancing the use of biomarkers in cancer drug development. Clinical Cancer Research 16: 3299-318, 2010.
DL Evers J He, JT Mason and TJ. O’Leary, “The Liposome-PCR Assay is More Sensitive than the VET-RPLA at Detecting Cholera Toxin in Feces and Water,” Journal of Clinical Microbiology 48: 4620-4622, 2010.
IE Chesnick, JT Mason, TJ O’Leary and CB Fowler, “Elevated Pressure Improves the Rate of Formalin Penetration while Preserving Tissue Morphology,” Journal of Cancer 1:178-83, 2010.
GD Huang, RE Ferguson, PN. Peduzzi and TJ. O’Leary, “Scientific and Organizational Collaboration in Comparative Effectiveness Research: The VA Cooperative Studies Program Model,” American Journal of Medicine 12 Supplement: e24-e31, 2010.
CB Fowler, IE Chesnick, CD. Moore, TJ. O’Leary, JT. Mason, “Elevated Pressure Improves the Extraction and Identification of Proteins Recovered from Formalin-Fixed, Paraffin-Embedded Tissue Surrogates,” PLoS ONE 5: e14253, 2010
CB Fowler, TJ O’Leary and JT Mason, “Protein Mass Spectrometry Applications on FFPE Tissue Sections,” Methods in Molecular Biology 724: 281-295, 2011.
CB Fowler, YG Man, S Zhang, TJ O’Leary, JT Mason and RE Cunningham, “Tissue microarrays: construction and uses,” Methods in Molecular Biology 724: 23-35, 2011.
CB Fowler, DL Evers, TJ O’Leary and JT Mason,” Antigen Retrieval Causes Protein Unfolding: Evidence for a Linear Epitope Model of Recovered Immunoreactivity,” Journal of Histochemistry and Cytochemistry, 59: 366-381, 2011.
DL Evers, CB Fowler, BR Cunningham, JT Mason and TJ O’Leary, “The Effect of Formaldehyde Fixation on RNA: Optimization of Formaldehyde Adduct Removal,” Journal of Molecular Diagnostics 13:282-288, 2011.
DL Evers, J He, YH Kim, JT Mason and TJ O’Leary, “Paraffin Embedding Contributes to RNA Aggregation, Reduced RNA Yield, and Low RNA Quality,” Journal of Molecular Diagnostics 13: 687-794, 2011.
TJ O’Leary, “Research Use Only’ Reagents: Is There an Imperative for Increased FDA Oversight?” Clinical Chemistry 57: 1681-1683, 2011.
CB Fowler, TJ Waybright, TD Veenstra, TJ O’Leary and JT Mason, “Pressure-assisted Protein Extraction: a Novel Method for Recovering Proteins from Archival Tissue for Proteomic Analysis,” Journal of Proteome Research 11: 2602-2608, 2012.
He, DL Evers, TJ O’Leary and JT Mason, “Immunoliposome-PCR: A Generic Ultrasensitive Antigen Detection System,” Journal of Nanobiotechnology 10, 26-, 2012.
TJ O’Leary, “Improving Patient-Centered Outcomes through Methodological Rigor,” (Editorial) Journal of Molecular Diagnostics 15: 1-2, 2013.
CB Fowler, TJ O’Leary and JT Mason, “Toward Improving the Proteomic Analysis of Formalin-Fixed, Paraffin-Embedded Tissue,” Expert Reviews of Proteomics 10: 389-400, 2013.
TJ O’Leary, “Assessing and Comparing the Performance of Molecular Diagnostic Tests (Editorial),” Journal of Molecular Diagnostics 16: 1-2, 2014.
CB Fowler, TJ O’Leary and JT Mason, “Improving the Proteomic Analysis of Archival Tissue by Pressure-Assisted Protein Extraction: A Mechanistic Approach,” Journal of Proteomics and Bioinformatics 24: 151-157, 2014.
PD Harvey, LJ Siever, GD Huang, S Muralidhar, H Zhao, P Miller, M Aslan, S Mane, M McNamara, T Gleason, M Brophy, R Przygodski, TJ O’Leary, M Gaziano, and J Concato. “The genetics of functional disability in schizophrenia and bipolar illness: Methods and initial results for VA cooperative study #572,” American Journal of Medical Genetics B: Neuropsychiatric Genetics,165B: 301-309, 2014.
TJ O’Leary, “Reflecting on my Time as Editor-in-Chief (Editorial),” Journal of Molecular Diagnostics 16: 593-594, 2014.
TJ O’Leary, “Regulating Laboratory-Developed Tests (Editorial),” Journal of Molecular Diagnostics 16: 595-598, 2014.
TJ O’Leary, JA Dominitz and KM Chang, “Veterans Affairs Office of Research and Development: Research Programs and Emerging Opportunities in Digestive Diseases Research,” Gastroenterology 149: 1562-1561, 2015.
JM Gaziano, J Concato, M Brophy, L Fiore, S Pyarajan, J Breeling, S Whitbourne, J Deen, C Shannon, D Humphries, P Guarino, M Aslan, D Anderson, R LaFleur, T Hommanod, K Schaa, J Moser, G Huang, S Muralidhar, R Przygodzki, TJ O’Leary, “Million Veteran Program (MVP): A Mega-Biobank to Study Genetic Influences on Health and Disease,” Journal of Clinical Epidemiology 70: 214-223, 2016.
GD Huang, JK Altemose and TJ O’Leary, “Public access to clinical trials: Lessons from an organizational implementation of policy,” Contemporary Clinical Trials 57:87-89, 2017.
KM Harrington, XT Nguyen, RJ Song, K Hannagan, R Quadan, DR Gagnon, K Cho, Deen JE, S Muralidhar, TJ O’Leary, JM Gaziano, SB Whitbourne and VA Million Veteran Program, “Gender Differences in Demographic and Health Characteristics of the Million Veteran Program Cohort,” Womens Health Issues 25: S56-S66, 2019.
TJ O’Leary, “The Journal of Molecular Diagnostics: 20 Years of Clinical Innovation” (Guest Editorial), Journal of Molecular Diagnostics 21: 935-937, 2019.
PD Harvey, N Sun, TB Bigdeli, AH Fanous, M Aslan, AK Malhotra, Q Lu, Y Hu, B Li, Chen , Mane S, Miller P, Rajeevan M, Sayward F, Cheung KH, Li Y, Greenwood TA, Gur RE, Braff DL, Consortium on the Genetics of Schizophrenia (COGS, Brophy M, Pyarajan S, O’Leary TJ, Gleason T, Przygodzki R, Muralidhar S, Gaziano JM, Concato J, Zhao H, JJ and Siever, “Genome-wide association study of cognitive performance in U.S. veterans with schizophrenia or bipolar disorder.” American Journal of Medical Genetics B: Neuropsychiatric Genetics 183: 181-194, 2020.
ME Sobel, JC Dreyfus, KD McKillip,C Kolarcik, WA Muller, MJ Scott, GP Siegal, KW Wadosky and TJ O’Leary, “Return of Individual Research Results: A Guide for Biomedical Researchers Utilizing Human Biospecimens.” American Journal of Pathology 190: 918-933, 2020.
H Hunter-Zinck, Y Shi, M Li, BR. Gorman, SG Gou Ji, N Sun, T Webster, A Liem, P Hsieh, P Devineni, P Karnam, L Radhakrishnan, J Schmidt, TL Assimes, J Huang, C Pan, D Humphries, M Brophy, J Moser, S Muralidhar, GD Huang, R Przygodzki, J Concato, JM Gaziano, J Gelernter, CJ O’Donnell, ER Hauser, H Zhao, TJ O’Leary, VA Million Veteran Program, PS Tsao, and S Pyarajan, on behalf of, “Genotyping Array Design and Data Quality Control in the Million Veteran Program,” American Journal of Human Genetics 106: 535-548, 2020.
TJ O’Leary and Y-P Tu, “Testing for SARS-CoV-2: Challenges in Getting Good Specimens, Choosing the Right Test, and Interpreting the Results, Critical Care Medicine, 48: 1680-1689, 2020.
TB Bigdeli, AH Fanous, Yi Li, N Rajeevan, F Sayward, G Genovese, R Gupta, K Radhakrishnan, AK Malhotra, N Sun, Qi Lu, Y Hu, B L, Q Chen, St Mane, P Miller, K-H Cheung, RE Gur, TA Greenwood, DL. Braff, Consortium on the Genetics of Schizophrenia (COGS), ED Achtyes, PF Buckley, MA Escamilla, D Lehrer, DP Malaspina, SA. McCarroll, MH. Rapaport, MP Vawter, MT Pato, CN. Pato, Genomic Psychiatry Cohort (GPC) Investigators, H Zhao, TR. Kosten, M Brophy, S Pyarajan, Y Shi, TJ. O’Leary, T Gleason, R Przygodzki, Sa Muralidhar, M Gaziano, Million Veteran Program (MVP), GD Huang, J Concato, LJ. Siever, M Aslan and PD Harvey. “Genome-wide association studies of schizophrenia and bipolar disorder in a diverse cohort of United States veterans,” Schizophrenia Bulletin 47:517-529, 2021.
K Fujiyoshi, EA Bruford, P Mroz, CL Sims, TJ O’Leary, AWI Lo, N Chen, NR Patel, KP Patel, B Seliger, M Song, FA Monzon, AB Carter, ML Gulley, SM Mockus, TL Phung, H Feilotter, HE Williams, S Ogino. Standardizing gene product nomenclature: a call to action. Proceedings of the National Academy of Science, 118: e202520711, 2021.
TJ O’Leary, Relative Sensitivity of Saliva and Upper Airway Swabs for Initial Detection of SARS-CoV-2 in Ambulatory Patients: Rapid Review. Journal of Molecular Diagnostics 23:265-273, 2021.
TJ O’Leary, Rigor, Reproducibility, and the p Value, American Journal of Pathology, 191: 805-805, 2021.
YP Tu, J Iqbal and TJ O’Leary, “Sensitivity of ID NOW and RT-PCR for Detection of SARS-CoV-2 in an Ambulatory Population,” eLife 10: e65726, 2021.
RG Depalma, VW Hayes and TJ O’Leary, “Optimal Serum Ferritin Level Range: Iron Status Measure and Inflammatory Biomarker,” Metallomics. 2021 Jun 11;13(6):mfab030. doi: 10.1093/mtomcs/mfab030.
DR Burnaska, GD Huang and TJ O’Leary, “Clinical Trials Proposed for the VA Cooperative Studies Program: Success Rates and Factors Impacting Approval,” Contemporary Clinical Trials Communications, 23: 100811 2021
Y Zhou and TJ O’Leary, “Relative Sensitivity of Anterior Nares and Nasopharyngeal Swabs for Initial Detection of SARS-CoV-2 in Ambulatory Patients: Rapid Review and Meta-Analysis,” PLoS ONE e0254559. doi: 10.1371/journal.pone.0254559, 2021
C Kolarcik, M Bledsoe and TJ O’Leary “Returning Individual Research Results to ‘Vulnerable’ Individuals,” American Journal of Pathology, in press.
Cooperative Clinical Trial Publications
Boden WE, O’Rourke RA, Teo KK, Hartigan PM, Maron DJ, Kostuk WJ, Knudtson M, Dada M,Casperson P, Harris CL, Chaitman BR, Shaw L, Gosselin G, Nawaz S, Title LM, Gau G, Blaustein AS, Booth DC, Bates ER, Spertus JA, Berman DS, Mancini GB, Weintraub WS; COURAGE Trial Research Group. “Optimal Medical Therapy with or Without PCI for Stable Coronary Disease.” New England Journal of Medicine 356:1503-1516, 2007.
The VA/NIH Acute Renal Failure Trial Network, “Intensity of Renal Support in Critically Ill Patients with Acute Kidney Injury,” New England Journal of Medicine 359: 7-20, 2008
WS Weintraub, JA Spertus, P Kolm, Maron DJ, Jurkovitz C, Zhang W, PM Hartigan, C Lewis, E Veledar, J Bowen, SB Dunbar, C Deaton, S Kaufman, RA O’Rourke, R Goeree, PG Barnett, KK Teo, WE Boden and the COURAGE Trial Research Group. “Effect of PCI on Quality of Life in Patients with Stable Coronary Disease,” New England Journal of Medicine 359: 677-687, 2008.
F Fried, W Duckwort, JH Zhang, T O’Connor, M Brophy, N Emanuele, GD Huang, PA McCullough, PM Palevsky, S Seliger, SR Warren, P Peduzzi and the VA NEPHRON-D Investigators. “Design of combination angiotensin receptor blocker and angiotensin-converting enzyme inhibitor for treatment of diabetic nephropathy (VA NEPHRON-D),” Clinical Journal of the American Society of Nephrology 4:361-368, 2009.
RL Jamison, MC, DE Humphries, PD Guarino, JS Kaufman , DS Goldfarb, SR Warren , JM Gaziano, P Lavori and the Veterans Affairs Site Investigators. Effect of the MTHFR C677T and A1298C polymorphisms on survival in patients with advanced CKD and ESRD: a prospective study. American Journal of Kidney Disease 53: 779-789, 2009.
Lederle, JA Freischlag, TC Kyriakides, FT Padberg, JS Matsumura, TR Kohler, PH Lin, JM Jean-Claude, DF Cikrit, KM Swanson, PN Peduzzi PN, Open Versus Endovascular Repair (OVER) Veterans Affairs Cooperative Study Group. “Outcomes following endovascular vs. open repair of abdominal aortic aneurysm: a randomized trial.” Journal of the American Medical Association 302: 1535-1542, 2009.
AL Shroyer, FL Grover, B Hattler, JF Collins, GO McDonald, E Kozora, JC Lucke, JH Baltz, D Novitzky, Veterans Affairs Randomized On/Off Bypass (ROOBY) Study Group. “On-pump versus off-pump coronary-artery bypass surgery.” New England Journal of Medicine 361 :1827-1837, 2009.
Follett KA, Weaver FM, Stern M, Hur K, Harris CL, Luo P, Marks WJ Jr, Rothlind J, Sagher O, Moy C, Pahwa R, Burchiel K, Hogarth P, Lai EC, Duda JE, Holloway K, Samii A, Horn S, Bronstein JM, Stoner G, Starr PA, Simpson R, Baltuch G, De Salles A, Huang GD, Reda DJ and the CSP 468 Study Group. “Pallidal versus subthalamic deep-brain stimulation for Parkinson’s disease.” New England Journal of Medicine 362: 2077-2091, 2010.
Dolor RJ, Ruybalid RL, Uyeda L, Edson RG, Phibbs C, Vertrees JE, Shih MC, Jacobson AK, Matchar DB; THINRS Site Investigators. “An evaluation of patient self-testing competency of prothrombin time for managing anticoagulation: pre-randomization results of VA Cooperative Study #481–The Home INR Study (THINRS).” Journal of Thrombosis and Thrombolysis. 2010 30:263-275, 2010.
Matchar DB, Jacobson A, Dolor R, Edson R, Uyeda L, Phibbs CS, Vertrees JE, Shih MC, Holodniy M, Lavori P; THINRS Executive Committee and Site Investigators. “Effect of Home Testing of International Normalized Ratio on Clinical Events.” New England Journal of Medicine 363: 1608-1620, 2010.
M McFall, AJ Saxon, CA Malte, B Chow, S Bailey, DG Baker, JC Beckham, KD Boardman, TP Carmody, AM Joseph, MW Smith, MC Shih, Y Lu, M Holodniy, PW Lavori; CSP 519 Study Team. “Integrating tobacco cessation into mental health care for posttraumatic stress disorder: a randomized controlled trial.” Journal of the American Medical Association 304: 2485-2493, 2010.
RA Rosenheck, JH Krystal, R Lew, PG Barnett, L Fiore, D Valley, SS Thwin, JE Vertrees, MH Liang and the CSP555 Research Group, “Long-acting risperidone and oral antipsychotics in unstable schizophrenia,” New England Journal of Medicine 364: 842-851, 2011.
PG Barnett, JY Scott, RA Rosenheck and the CSP 555 Study Group, “How do clinical trial participants compare to other patients with schizophrenia,” Schizophrenia Research. 130: 34-39, 2011.
JH Krystal, RA Rosenheck, JA CramerJC , Vessicchio, KM Jones, JE Vertrees, RA Horney, GD Huang, C Stock and the Veterans Affairs Cooperative Study No. 504 Group, “Adjunctive risperidone treatment for antidepressant-resistant symptoms of chronic military service-related PTSD: a randomized trial, “ Journal of the American Medical Association 306:493-502, 2011.
PG Barnett, JY Scott, Krystal JH, Rosenheck RA, CSP 555 Research Group, “Cost and cost-effectiveness in a randomized trial of long-acting risperidone for schizophrenia,” Journal of Clinical Psychiatry 73: 696-702, 2012.
FA Lederle, JA Freischlag, TC Kyriakides, JS Matsumura, FT Padberg, TR Kohler, P Kougias, JM Jean-Claude, DF Cikrit, KM Swanson, OVER Veterans Affairs Cooperative Study Group. “Long-term comparison of endovascular and open repair of abdominal aortic aneurysm,” New England Journal of Medicine 367: 1988-1997, 2012.
JR O’Dell, TR Mikuls, TH Taylor, V Aluwalia, M Brophy, Sr Warren, RA Lew, AC Cannella, G Kunkel, CS Phibbs, AH Anis, S Leatherman, E Keystone, CSP551 RACAT Investigators, “Therapies for active rheumatoid arthritis after methotrexate failure,” New England Journal of Medicine 369: 307-318, 2013.
LF Fried, N Emanuele, JH Zhang, M Brophy, TA Conner, W Duckworth, DJ Leehey, PA McCullough, T O’Connor, PM Palevsky, RF Reilly, SL Seliger, SR Warren, S Watnick, P Peduzzi, P Guarino; VA NEPHRON-D Investigators, “Combined Angiotensin Inhibition for the Treatment of Diabetic Nephropathy,” New England Journal of Medicine, 369: 1892-1903, 2013.
KC Lee, MA Weinstock and the Department of Veterans Affairs Topical Tretinoin Chemoprevention Trial Group. “Periocular actinic keratosis, keratinocyte carcinomas, and eyeglasses use,” Journal of the American Academy of Dermatology 69: 165-167, 2013.
SR Warren, DW Raisch, HM Campbell, PD Guarino, JS Kaufman, E Petrokaitis, DS Goldfarb, JM Gaziano, RL Jamison, Veterans Affairs Site Investigators. “Medication adherence assessment in a clinical trial with centralized follow-up and direct-to-patient drug shipments,” Clinical Trials 10:441-448, 2013.
JC Rothlind, MK York, K Carlson, P Luo, WJ Marks, FM Weaver, M Stern, K Follett, D Reda for the CSP-468 Study Group.” Neuropsychological changes following deep brain stimulation surgery for Parkinson’s disease: comparisons of treatment at pallidal and subthalamic targets versus best medical therapy. Neurology Neurosurgery and Psychiatry; 86: 622-629, 2015.
RH Pietrzak, RA Rosenheck, JA Cramer, JC Vessichio, J Tsai, SM Southwick, JH Krystal and the VA CSP 504 Collaborative Group. “Elucidating the transdiagnostic dimensional structure of trauma-related psychopathology: Findings from VA cooperative study 504 – risperidone treatment for military service-related chronic post-traumatic stress disorder.” Journal of Affective Disorders 172: 331-336, 2015.
JT Powell, MJ Sweeting, P Ulug, Blankensteijn, FA Lederle, JP Becquemin, JP Greenhalgh and the EVER, DREAM, OVER and ACE Trialists. “Meta-analysis of individual-patient data from EVAR-1, DREAM, OVER and ACE trials comparing outcomes of endovascular or open repair for abdominal aortic aneurysm over 5 years.” British Journal of Surgery 104: 166-178, 2017
AL Shroyer, B Hattler, TH Wagner, JF Collins, JH Baltz, JA Quin, GH Almassi, E Kozora, F Bakaeen, JC Cleveland Jr, M Bishawi, FL Grover and Veterans Affairs ROOBY-FS Group. “Five-year outcomes after on-Pump and off-pump coronary-artery bypass.” New England Journal of Medicine 377: 623-632, 2017.
JA Dominiitz, DJ Robertson, DJ Ahnen, JE Allison, M Antonelli, KD Boardman, M Ciarleglio, , BJ Del Curto, GD Huang, TF Imperiale, MF Larson, D Lieberman, T O’Connor, TJ O’Leary, P Peduzzi, D Provenzale, A Shaukat, S Sultan, A Voorhees, R Wallace, and PD Guarino for the CONFIRM Study Group. “Colonoscopy versus Fecal Immunochemical Test in Reducing Mortality from Colorectal Cancer (CONFIRM): Rationale for Study Design,” American Journal of Gastroenterology: 112: 1736-1746, 2017.
S Mohamed, GR Johnson, P Chen, PB Hicks,LL. Davis, J Yoon, TC Gleason, JE Vertrees, K Weingart, I Tal, A Scrymgeour, DD Lawrence, B Planeta, ME Thase, GD Huang, S Zisook, and the VAST-D Investigators “Effect of Antidepressant Switching vs Augmentation on Remission Among Patients with Major Depressive Disorder Unresponsive to Antidepressant Treatment: The VAST-D. Randomized Clinical Trial. Journal of the American Medical Association 318:132-145, 2017.
LL Davis, TC Kyriakides, AM Suris, LA Ottomanelli, L Mueller, PE Parker, SG Resnick, R Toscano, AA Scrymgeour, RE Drake; VA CSP #589 Veterans Individual Placement and Support Toward Advancing Recovery Investigators. “Effect of Evidence-Based Supported Employment vs Transitional Work on Achieving Steady Work Among Veterans with Posttraumatic Stress Disorder: A Randomized Clinical Trial,” JAMA Psychiatry 75: 316-324, 2018.
MA Zenati, DL Bhatt, FG Bakaeen, EM Stock, K Biswas, JM Gaziano, RF Kelly, EE Tseng, J Bitondo, JA Quin, GH Almassi, M Haime, B Hattler, E DeMatt, A Scrymgeour, GD Huang, and REGROUP Trial Investigators. “Randomized Trial of Endoscopic or Open Vein-Graft Harvesting for Coronary-Artery Bypass.” New England Journal of Medicine 380: 132-141, 2019.
JC Rothlind, MK York, P Luo, K Carlson, WJ Marks, FM Weaver, M Stern, KA Follett, JE Duda, DR Reda; CSP-468 study group. “Predictors of multi-domain cognitive decline following DBS for treatment of Parkinson’s disease,” Parkinsonism and Related Disorders 95: 23-27, 2021.
Books (3)
AJ Garvin, TJ O’Leary, J Bernstein and HS Rosenberg, Eds. Pediatric Molecular Pathology (Perspectives in Pediatric Pathology, vol. 15) Karger, Basel, 1991.
AJ Garvin, TJ O’Leary, J Bernstein and HS Rosenberg, Eds. Pediatric Molecular Pathology: Quantitation and Applications (Perspectives in Pediatric Pathology, vol. 16) Karger, Basel, 1992.
TJ O’Leary, Ed. Advanced Diagnostic Methods in Pathology: Principles, Practice and Protocols, WB Saunders, Philadelphia, 2002.
Book Chapters (26)
IW Levin and TJ O’Leary, “Raman Spectroscopic Studies of Drug‑Membrane Interactions,” in Applied Polymer Analysis and Characterization, John Mitchell, Ed., Hanser, Munich, Germany pp. 143‑156, 1987.
TJ O’Leary, “Raman Spectroscopy of Biomolecules,” in Lasers, Spectroscopy and New Ideas: A Tribute to Arthur L. Schawlow, WM Yen and MD Levenson, Eds., Springer Verlag, Berlin, Heidelberg pp. 317‑326, 1987.
TJ O’Leary, WF Engler and KM Ventre, “Infrared microspectroscopy of pathologic tissue,” Proceedings of the Seventh International Conference on Fourier Transform Spectroscopy, SPIE Volume 1145, Bellingham, Washington, 1989, pp. 534‑535.
TJ O’Leary, “Immunologic and Molecular Biologic Techniques in Diagnosis of AIDS,” in Pathology of IDS and Other Manifestations of HIV Infection, VV Joshi, Ed., Igaku‑Shoin Medical Publishers, New York, pp. 313‑328, 1990.
TJ O’Leary and CF Wright, “Pediatric Molecular Pathology,” in Pediatric Molecular Pathology Perspectives in Pediatric Pathology, vol. 15), AJ Garvin, TJ O’Leary, J Bernstein and HS Rosenberg (Eds.), Karger, Basel, 28‑82, 1991.
TJ O’Leary, “Vibrational Spectroscopy of Cholesterol‑Lipid Interactions,” in Cholesterol and Membrane Models (L Finegold, ed.), CRC Press, 1993.
TJ O’Leary, “Laboratory Diagnosis of HIV Infection,” in Synopsis of AIDS Pathology in Children, C Moran (Ed.) American Registry of Pathology, Washington, DC, pp 15-22, 1997.
TJ O’Leary, “Nucleic Acid Amplification Methods for Identifying Cytogenetic Abnormalities” in Human Cytogenetic Cancer Markers (SR Wolman and S Sell, Eds.) Humana Press, Totowa NJ 71-91, 1997.
RM Przygodzki, ZD Goodman, L Rabin, JA Centeno, Y Liu, AE Hubbs and TJ O’Leary, “Hemochromatosis (HFE) Gene Analysis of Formalin-Fixed Samples Suspect for Elevated Iron Content and Hemochromatosis,” in Metal Ions in Biology and Medicine, volume 6 (JA Centeno, P Collery, G Vernet, RB Finkelman, H Gibb and JC Etienne, Eds.) John Libbey Eurotext, Montrouge, France pp 688-690, 2000
JM Controy, RL Becker, W Lefkowitz, KL Christopher, RB Surana, TJ O’Leary, DP O’Leary and TG Kolda, “Hidden Markov Models for Chromosome Identification,” in Proceedings of the 14th IEEE Symposium on Computer-Based Medical Systems (CBMS 2001), pp 473-477, 2001.
TJ O’Leary “Antigens: Molecular Biology and Structure” in Advanced Diagnostic Methods in Pathology: Principles, Practice and Protocols (Timothy O’Leary, Ed.), WB Saunders, Philadelphia, pp 35-92, 2002.
TJ O’Leary “Infectious Diseases” in Advanced Diagnostic Methods in Pathology: Principles, Practice and Protocols (Timothy O’Leary, Ed.), WB Saunders, Philadelphia, pp 159-190, 2002.
TJ O’Leary “Cardiovascular System” in Advanced Diagnostic Methods in Pathology: Principles, Practice and Protocols (Timothy O’Leary, Ed.), WB Saunders, Philadelphia, pp 191-212, 2002.
TJ O’Leary “Testes, Bladder and Prostate” in Advanced Diagnostic Methods in Pathology: Principles, Practice and Protocols (Timothy O’Leary, Ed.), WB Saunders, Philadelphia, pp 299-310, 2002.
J Lichy and TJ O’Leary “Breast and Female Genital System” in Advanced Diagnostic Methods in Pathology: Principles, Practice and Protocols (Timothy O’Leary, Ed.), WB Saunders, Philadelphia, pp 329-350, 2002.
I Lubensky and TJ O’Leary ,”Endocrine System” in Advanced Diagnostic Methods in Pathology: Principles, Practice and Protocols (Timothy O’Leary, Ed.), WB Saunders, Philadelphia, pp 351-384, 2002.
TJ O’Leary “Soft Tissue and Bones” in Advanced Diagnostic Methods in Pathology: Principles, Practice and Protocols (Timothy O’Leary, Ed.), WB Saunders, Philadelphia, pp 421-458, 2002.
TJ O’Leary “Skin” Advanced Diagnostic Methods in Pathology: Principles, Practice and Protocols (Timothy O’Leary, Ed.), WB Saunders, Philadelphia, pp 459-476, 2002.
TJ O’Leary “Cytopathology” in Advanced Diagnostic Methods in Pathology: Principles, Practice and Protocols (Timothy O’Leary, Ed.,) WB Saunders, Philadelphia, pp 477-506, 2002.
TJ O’Leary and T Emory, “Gastrointestinal System” in Immunomicroscopy, 3rd Ed (CR Taylor and C Cote, Eds.) WB Saunders, Philadelphia, pp 319-228, 2006.
CB Fowler, JT Mason and TJ O’Leary, “Design of a Tissue Surrugate to Examine Accuracy of Proteomic Analysis,” in Antigen Retrieval Immunohistochemistry Based Research and Diagnostics (SR Shi and CR Taylor, Eds.), Wiley, Hoboken, 2010.
JT Mason, CB Fowler and TJ O’Leary, “Study of Formalin Fixation and Heat—Induced Antigen Retrieval,” in Antigen Retrieval Immunohistochemistry Based Research and Diagnostics (SR Shi and CR Taylor, Eds.), Wiley, Hoboken, 2010.
TJ O’Leary, CB Fowler, Dl Evers, RE Cunningham and JT Mason, “Future Directions,” in Antigen Retrieval Immunohistochemistry Based Research and Diagnostics (SR Shi and CR Taylor, Eds.), Wiley, Hoboken, 2010.
CB Fowler, TJ O’Leary and JT Mason, “Techniques of Protein Extraction from FFPE Tissue/Cells for Mass Spectrometry,” in Antigen Retrieval Immunohistochemistry Based Research and Diagnostics (SR Shi and CR Taylor, Eds.), Wiley, Hoboken, 2010.
DL Evers, CB Fowler, TJ O’Leary and JT Mason, “Coupling Liposome-Encapsulated Nucleic Acids with the Polymerase Chain Reaction: A Generic Assay Platform for High Sensitivity Analyte Detection,” in Liposomes in Analytical Methodologies, KT Edwards, Ed.) CRC Press. Boca Raton, 2016.
TJ O’Leary, “Precision Medicine: “Challenges in Changing the Paradigm for Medical Care in the 21st Century,” in Pathological Specimens and Genomic Medicine: Emerging Issues, MA Tangrea, AZ Rosenberg and MR Emmert-Buck, World Scientific, Hackensack, NJ, 2019.
Technical Reports and Other Publications (15)
TJ O’Leary, “Electron Spectroscopy of Lead‑Oxygen Systems”, B.S. Honors Thesis, PurdueUniversity, June 1972 (N Winograd, advisor).
T Axelrod, A Bernhardt, T O’Leary, J Marling, R Keeler and L Wood, “Some Approaches to the Photochemical and Photophysical Separation of Isotopes” UCRL Report 74904, 1973.
JI Brauman, TJ O’Leary and AL Schawlow, “Isotope Separation by Selective Unimolecular Photoisomerization,” Stanford University Microwave Laboratory Report 2336, 1974.
TJ O’Leary, “Wideband Chelate Lasers in the Visible,” Stanford University Microwave Laboratory Report 2457, 1975
TJ O’Leary, “Applications of Lasers to Chemical Problems,” Ph.D. Dissertation, Stanford University, January 1976 (AL Schawlow and J Brauman, advisors).
TJ O’Leary, “Photolysis of Hydrogen Bromide ‑‑ Deuterium Bromide Mixtures at 2537 A,” Stanford University Ginzton Laboratory Report, 1980.
TJ O’Leary, “Atomic Cartesian Coordinates for Molecules” Quantum Chemistry Program Exchange QCMP 003, 1984.
TJ O’Leary, “General Vibrational Analysis Package” Quantum Chemistry Program Exchange QCMP 012, 1985.
TJ O’Leary, L Brindza, JA Kant, K Kaul, L Sperry and M Stetler‑Stevenson, “Immunoglobulin and T-Cell Receptor Gene Rearrangement Assays: Proposed Guideline,” NCCLS Document MM2-P, National Committee for Clinical Laboratory Standards, Lancaster, PA, 1994.
TJ O’Leary, L Brindza, JA Kant, K Kaul, L Sperry and M Stetler‑Stevenson, “Immunoglobulin and T-Cell Receptor Gene Rearrangement Assays: Guideline,” NCCLS Document MM2, National Committee for Clinical Laboratory Standards, Lancaster, PA, 1995.
TJ O’Leary, P Edmonds, AD Floyd, R Mesa-Tejada, M Robinowitz, PA takes and CR Taylor, “Quality Assurance for Immunocytochemistry; Proposed Guideline,” NCCLS Document MM4-P, National Committee for Clinical Laboratory Standards, Lancaster, PA, 1997.
TJ O’Leary, P Edmonds, AD Floyd, R Mesa-Tejada, M Robinowitz, PA Takes and CR Taylor, “Quality Assurance for Immunocytochemistry; Approved Guideline,” NCCLS Document MM4, National Committee for Clinical Laboratory Standards, Lancaster, PA 1999.
TJ O’Leary, PH Domer, JA Fletcher, CA Griffin, K Kaul, KT Presto, GH Segal and S Wolman, “Nucleic Acid Amplification Assays for Molecular Hematopathology; Proposed Guideline,” NCCLS Document MM5-P, NCCLS, Lancaster, PA 2000.
DH Altmiller, RK Enns, CS Hinkel, RM Madej and TJ O’Leary, “Immunoglobulin and T-Cell Receptor Gene Rearrangement Assays; Approved Guideline – Second Edition, NCCLS Document MM2A2, NCCLS, Lancaster, PA 2002.
TJ O’Leary, PH Domer, JA Fletcher, CA Griffin, K Kaul, KT Presto, GH Segal and S Wolman, “Nucleic Acid Amplification Assays for Molecular Hematopathology; Approved Guideline,” NCCLS Document MM5, NCCLS, Lancaster, PA 2003.